Yearly Archives: 2014

There are many times when I tell the people that I am doing a PhD in bioinformatics, they are looking at me a bit weird like they don’t even know what that means. The simplest reply that I usually give is the analysis of biological data using informatics.

Nowadays there is a vast majority of biological technologies and developments (Next Generation Sequencing technologies) to extract information (genetic data) from humans and other species. These technologies are improving and they are becoming cheaper, more and more every day. However, even if we have millions of data, if we are not able to analyze, handle and understand them, they are useless.

This is the exact point that bioinformatics, an interdisciplinary science that involves biology, informatics, genetics, mathematics and chemistry comes to solve this problem. Things in bioinformatics could be done fast compared to the wet lab experiments that could take ages to finish and even if they finish, sometimes you need to rerun them because something went wrong in the process. However, one may think that reformatting, analyzing the data and producing graphs could be a bit boring but the real fun comes when you do understand the graphs and you make the real connection with biology.

To give an example, one of the goals of population geneticists is to analyze the data (e.g. through statistics) that will provide information about specific regions in the DNA that have a story to tell us. Identifying regions and as a consequence genes and even further pathways (networks of genes) in controls (healthy people) and cases (diseased people) can help to the earlier diagnosis of a disease such as diabetes which is one of the leading diseases, the prevalence of which is increasing more and more.

From Biology -> Informatics or from Informatics -> Biology?

How to get there?

In my opinion pure bioinformaticians like me are the ones that have the real problem (gap). This is because they don’t have a deep knowledge neither in biology nor informatics. The work of a biologist can’t be completely done without the help of a (bio-) informatician or the other way around. The reason for this is the following: the biologist will produce the results in the lab, but once he has the data he is unable to analyze and interpret them. Computational modeling of a biological system or the statistical analyses of a large-scale datasets are of crucial importance to provide a more general biological overview rather than just an opinion on the specific experiment under the specific parameters, limitations and even environmental conditions of the lab.

The question or statement that is pointed out usually from students is “Bioinformatics seems really difficult! I really don’t know if I can manage”.

The main aspect that someone needs to think is what it is more on demand in the job market. Obviously the technical knowledge and expertise of a bioinformatician are the skills that are required the most, in positions both in academia and industry and most of the times with a very good salary. However, this is not a sufficient reason to follow bioinformatics. One should ask oneself what it is the reason that he would like to follow this field (a question that you will probably be asked in many interviews as well). As Galileo Gakilei said: “Passion is the genesis of genius”.

Now how you will realize that you like bioinformatics? Certainly, you can’t become passionate just from one course in the university. There are many things that you can do to help you understand this. The first and probably the easiest is to go to different conferences and seminars that will help you open your mind and see a different world. There you will have the opportunity to attend presentations from people with different backgrounds in the field of bioinformatics, each of who sees things from a little different perspective.

In the beginning of the conference you may feel that you don’t understand anything. However don’t get nervous or disappointed, this might be because the projects are too complicated with too much information. However, there is also the possibility that the speakers don’t explain their work well. Many researchers even though they are extremely intelligent, they find it amazingly difficult to describe their work to a third person. Have in mind that even if bioinformatics is an multidisciplinary field, in a presentation you need to keep as much as possible the parts of informatics, biology etc separately in order to give the opportunity to the others (informatician, biologists etc) to understand their part.

The most crucial point for you in such conferences is to meet these people, talk with them, get advice and feedback on the field: what you could follow exactly in bioinformatics (genomics, proteomics etc) according to your interests? information about well known universities and even possible scholarships for which could apply. Have in mind that fellowships and awards are things that will make your CV distinct among the million others that have applied for the same job.

There is also always google and books to get more informed about bioinformatics but it is less interesting rather than getting to know people or students that had these experiences themselves. You have fun, get informed and grow up your communicational circle, all at the same time.

What about Marie Curie?

Previously I talked about scholarships. Having the honor to be a Marie Curie ambassador, as a fellow of the Marie Skłodowska-Curie Actions and more specifically of the Innovative Training Networks (ITN)http://intercrossing.wikispaces.com/, I will talk a bit more about this. Marie-Curie scholarships named after the Polish-French researcher Marie Skłodowska-Curie actions (MSCA), being the first woman that won a Nobel Prize is probably the best and the most well paid fellowship in Europe. Getting such a fellowship can be very difficult as it is a very competitive program

The goal of MSCA is to train researchers at all stages of their career, independent of nationality offering them experiences both in academy and private sectors not only on bioinformatics but training on organizational, communicational and diplomatic skills as well. The knowledge and the expertise that one will acquire from a MSCA fellowship will make him appealing and attractive in the long-term future.

I received my degree from Greece in the field of Computational and Biomedical informatics in the University of Central Greece, I was then awarded with a BBSRC fellowship to attend the Master of Research in Computational Biology in the University of York, UK and immediately after that I was awarded with the Marie Curie scholarship which will allow me to complete my doctoral in almost one year and half gaining experience both in academia (University of Joseph Fourier, Grenoble and University of St.Andrews, UK) and industry (Era7, Granada Spain).

As an IEEE member and Marie-Curie fellow, I support and encourage the students to think about bioinformatics. I am more than happy to give further advice and information from my small experience in the field

([email protected]

http://intercrossing.wikispaces.com/Alexandra+Vatsiouhttps://sites.google.com/site/alexvatsiou/)

Alexandra Vatsiou

IEEE Region 8 mourns the death of past Director Dr Sven-Olof Ohrvik. Dr Öhrvik, who was Professor Emeritus at Lund University, died at age 85 on April 15, 2014. With his quiet, unassuming manner, he led our Region from 1989 to 1990, at a time when the Iron Curtain was opened and the Cold War had come to an end. His leadership ensured that members from the former Eastern Bloc countries could obtain better service from IEEE with the development.of new Sections. He was the first regional officer to visit some of these Sections, such as Belarus, which was very much appreciated by the members. During his term as Director the Moscow Section (which is today the Russia Section) was formed. In 1990 due to his initiative the IEEE Board of Directors held its first meeting outside of North America in Brussels, Belgium. In the same year he organized the first IEEE Region 8 Meeting outside of Region 8, providing an opportunity for Section Chairs and volunteer delegates to attend the IEEE Section Congress in Toronto, Canada.

Before Sven-Olof Öhrvik was appointed as the professor in the Faculty of Engineering and the Department of Applied Electronics at Lund University he had an outstanding career as a Development Manager at Ericson Radio Systems in Kista, Sweden. He is regarded as one of the foremost pioneers and visionaries in mobile communication. In the 1980s he presented a paper in which he predicted an unbelievable reduction in the size of the mobile phone. His solid theoretical and practical knowledge was invaluable to him as an engineering educator and academic leader.

Dr Öhrvik started his career as an IEEE volunteer in 1983 when he was elected Chair of the IEEE Sweden Section. He held this office for four years until 1987, and in1985/6 he also was Chair of the joint VT/COM/IT Chapter. In 1988 he was elected as IEEE Region 8 Director for the term 1989 to 1990, and continued to serve as a volunteer on several IEEE committees and boards.

We mourn the loss of Sven-Olof, and share the grief of his wife Lotte and his daughters. He will be sadly missed.

Kurt R. Richter
1991-1992 IEEE Director Region 8

Charles W Turner
1993-1994 IEEE Director Region 8

Rui Miguel Costa received, this past April 5, in Budapest, IEEE’s Larry K. Wilson Regional Student Activities Award, “For an extraordinary accomplishment called: IEEE IST Academic”.

It was awarded in 2013 by IEEE’s region 8, which comprehends all countries in Europe, Africa, and Middle East.

IEEE-IST Academic was founded by Rui, at the Taguspark campus of Instituto Superior Técnico. The launch was on May 21, 2012.

In July 2012, at the region 8 student branch congress in Madrid, Rui proposed a global project, of which IEEE-IST Academic was a pilot. The project received a Seed Grant from IEEE Foundation’s New Initiatives Program and was officially launched in September 2013. IEEE Academic is an international project, with college students and professors creating free educational materials together.

It was created by students and it is mostly student-driven: students record and edit videos, take care of logistics, coordinate across local groups, maintain the website, and train new people. Working side-by-side with professors, they are creating new contents (that will be freely available to everyone, everywhere) and trying to create new tools to support teaching. Dozens of local groups from over 15 countries are involved, with more countries joining by the month.

In May 13 and 14, IEEE Academic will be at Collision Conf, in Downtown Las Vegas, as part of Collide, that selects 150 of the world’s most promising startups.